rs32734992 SNP Detail

Summary

• ID
  rs32734992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144919632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAGATAC ACTCACCCCA AGGAAAAAGC TAACAACATA
  AGACAGACCC AAAACAAAAG CTCCCCTAAA AGTTGACCCA GCCTCAAAGG AAGGCAGATA
  Y
  TTACTTGTCT ATGCAAGACA TAATTATAAT CAGGGACAGT TAAAAAAAAA TCAATTAACT
  CTTCAGGGTG ATGATCTACA CCTTTAATTC CAGCACAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45687396	mCV22764416	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147848307	ENSMUSSNP4956160	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss321412771	CHEV_4_144782965	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32734992					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144919632 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15267	CpG island 15267			1262 bp proximal
Rr398672	regulatory region 398672			1855 bp upstream
Rr604318	regulatory region 604318			within coordinates
Rr604319	regulatory region 604319			407 bp proximal
Rr604320	regulatory region 604320			1286 bp proximal
Rr604321	regulatory region 604321			1933 bp proximal
Tssr44481	transcription start site region 44481			1891 bp downstream
Tssr44482	transcription start site region 44482			1905 bp downstream
Tssr44483	transcription start site region 44483			1937 bp downstream
Vps13d	vacuolar protein sorting 13D			Intron
				Noncoding-Transcript-Variant