rs32723780 SNP Detail

Summary

• ID
  rs32723780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180536852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACACGGA GACACGGGTG
  TGTCACTGTC AGCTGATTCT TCTCTTGGAC TCGGGCCGAC CTCTCACTTC ACACAGACCC
  AGTTCTAAGG CTGCTCAAGG GTCTCAGATC TCTCACACAC TTAGAAACAG GTGGTCACTT
  GGGACAGCTC CTGCAAGAGC CCTGAACTGA GCCTGTTGGG AGGAGGAAGC AGCGTGGTGC
  K
  GAGTGGTTTT CAAGAGTCCG TGAGACGGAC CAGCCCCAGT GTGCTCTCTC TGGTGTGTTG
  ATCCTCCCAC TGGGCATGAG GGAAGGATCT GCTCACACTT CAAAACTCTA CTCACTCTCT
  GGACTCCCAC ATCTCAGGAT GGGGGTGGGG GTGGGAGTGG GGGAGCGAGA GCCGCCTGCC
  TCAGAACTCT GCTACCTTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46720081	NES10674306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32723780					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46720081	NES10674306	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180536852 () rs orientation: forward

Symbol	Name	Function Class
Rr424548	regulatory region 424548	1180 bp distal
Rr424549	regulatory region 424549	within coordinates