rs32722620 SNP Detail

Summary

• ID
  rs32722620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151051848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGGGA TGGAACCCAT
  CTCACGGCGG CACTCCCACG GGCTGTTTCA GATCCAAGCT CCATGTAGTT AATGTAGCCT
  GAAATCTCAC CATGTTCCAA GAAATTGCTA GAGCCAAGCC TGCTGGTATG TGCTTATAAC
  CCTAGCATTC CCGAGGCTAA GGCAGGAGGA CTGTTCCAAG TTTGACGCCA ACCTGGTCTC
  W
  GCATTGAGTT CTAAGCTAGC CCGAACTATG TGTCCAGACT GTGTCTCAAA AACCCAGGAA
  CAATGGTTAG ATGAAGACTC CGTTGGTGAG ATGCTCACTG TGGAAAAATG ATGGCCGGAG
  AACTCCAGTT CGAGCCCAGA GCCAACGTCA AGAGGCTGGG TGACCTACTG CGCAGACGCA
  ATTCTAGCAC GGGGAGATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46720348	NES11010215	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32722620					SNP	T	A	A	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46720348	NES11010215	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151051848 () rs orientation: forward

Symbol	Name	Function Class
Gm30120	predicted gene, 30120	within coordinates
Gm68496	predicted gene, 68496	within coordinates
Rr398888	regulatory region 398888	1947 bp downstream
Rr605472	regulatory region 605472	1912 bp distal
Rr605475	regulatory region 605475	1623 bp distal
Rr605476	regulatory region 605476	716 bp distal
Rr605477	regulatory region 605477	396 bp distal
Rr605478	regulatory region 605478	628 bp distal
Rr605479	regulatory region 605479	1328 bp proximal
Rr605480	regulatory region 605480	1645 bp proximal