rs32722334 SNP Detail

Summary

• ID
  rs32722334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148223234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC CCTGGGGACT GAGATGAAGA
  Y
  GTTGGTGGTA GGTCTGCATT TTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45685642	mCV24936803	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss147994251	ENSMUSSNP931222	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321417605	CHEV_4_147512886	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32722334					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148223234 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			1089 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1507 bp upstream
Rr604600	regulatory region 604600			860 bp proximal
Rr604601	regulatory region 604601			915 bp proximal
Rr604602	regulatory region 604602			1215 bp proximal
Rr604603	regulatory region 604603			1428 bp proximal
Rr604604	regulatory region 604604			1476 bp proximal
Tssr40254	transcription start site region 40254			1703 bp upstream
Tssr40255	transcription start site region 40255			1734 bp upstream
Tssr40256	transcription start site region 40256			1905 bp upstream
Tssr40257	transcription start site region 40257			1922 bp upstream
Tssr40258	transcription start site region 40258			1994 bp upstream