rs32722001 SNP Detail

Summary

• ID
  rs32722001
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151051436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCTACC TGGGACCAGG
  GAGACTCCAG GATGAAGAGG TGCCAGGAGT CATTTAATTA TCACCTGTCT TCTTGCAGAC
  AAGAAGGGAA AATGATGGTC ATCTTCTGGG GACTAAGGAG ATCACACTGT TGGCCAGGGT
  CTATACCCTC AGATGTTAAC TTGGTCTCAA TTAGACGGAA CCAGGAAGTT CCTAACCACG
  W
  GCAATCAGCC CATCAGAAGA AAACATGGTC TTGGGCAGAG AATGAAAATT AGAGACAGCA
  ATTTAAGTAA CTAAGACCAT TCTAAAGCAT GCATGACACG TGGCTTTGTT TGGTTTTTGA
  GAGATGGTCT CATGTAACCC AGGCTCATTA TGTAGATCAG CCTAATTCTG AACTCCTGAT
  CCTCCTGCCT CCACCACACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46720339	NES11010212	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	T	T	T	T	T	T	T	T	A
ss148060844	ENSMUSSNP4068020	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32722001					SNP	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46720339	NES11010212	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151051436 () rs orientation: forward

Symbol	Name	Function Class
Gm30120	predicted gene, 30120	within coordinates
Gm68496	predicted gene, 68496	within coordinates
Rr398888	regulatory region 398888	1535 bp downstream
Rr605472	regulatory region 605472	1500 bp distal
Rr605474	regulatory region 605474	1604 bp distal
Rr605475	regulatory region 605475	1211 bp distal
Rr605476	regulatory region 605476	304 bp distal
Rr605477	regulatory region 605477	within coordinates
Rr605478	regulatory region 605478	216 bp distal
Rr605479	regulatory region 605479	1740 bp proximal