rs32720258 SNP Detail

Summary

• ID
  rs32720258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87210003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT CCAGCACTTA CTTTTCAAAG
  R
  GGCTGGCCCC TGATCTCAGC CCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45184642	mCV24367543	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss144881140	ENSMUSSNP6496137	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32720258					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87210003 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Efhd1	EF hand domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr414772	regulatory region 414772			within coordinates
Rr414773	regulatory region 414773			250 bp distal
Rr414774	regulatory region 414774			82 bp distal
Tssr7837	transcription start site region 7837			519 bp downstream