rs32715453 SNP Detail

Summary

• ID
  rs32715453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117771169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCGGGTCC AGGATCATTC AGCATCCGTG TGGTTTCTAA
  CGTGGGGGTG GGGGTGGCTG AGTGGCAGGT CTTGTGAGTT TCTGGTTCCC TCCAGAACTC
  Y
  GCCTGCTTTT CTCCTGGATC TGGGCAGGAG CCGATTTGGT TATAAGTCTA AACCCTTCAG
  CACCCTACAG GGAACAACCT AAGATCCTAG AGTATCTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45684952	mCV25045958	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss147295290	ENSMUSSNP5858891	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32715453					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117771169 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14673	CpG island 14673			1640 bp distal
Cpgi14674	CpG island 14674			332 bp proximal
Ipo13	importin 13			Intron
				Noncoding-Transcript-Variant
Rr398419	regulatory region 398419			1142 bp upstream
Rr598257	regulatory region 598257			within coordinates
Rr598258	regulatory region 598258			974 bp proximal
Rr598259	regulatory region 598259			1017 bp proximal
Tssr43010	transcription start site region 43010			729 bp downstream
Tssr43011	transcription start site region 43011			968 bp downstream
Tssr43012	transcription start site region 43012			996 bp downstream
Tssr43013	transcription start site region 43013			1064 bp downstream
Tssr43014	transcription start site region 43014			1157 bp downstream
Tssr43015	transcription start site region 43015			1221 bp downstream