rs32712620 SNP Detail

Summary

• ID
  rs32712620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63321622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC ACAGACAAGC ATCCCTCCCC
  W
  CTTCTCCCCG CCCCTGCAGC TGAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45684134	mCV24479248	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss146443578	ENSMUSSNP5773888	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32712620					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63321622 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akna	AT-hook transcription factor			Intron
				mRNA-UTR
Gm52742	predicted gene, 52742			1259 bp downstream
Rr593542	regulatory region 593542			within coordinates
Rr593543	regulatory region 593543			1460 bp proximal
Tssr42040	transcription start site region 42040			1684 bp upstream
Tssr42041	transcription start site region 42041			126 bp upstream
Tssr42042	transcription start site region 42042			111 bp upstream
Tssr42043	transcription start site region 42043			99 bp upstream
Tssr42044	transcription start site region 42044			35 bp upstream
Tssr42045	transcription start site region 42045			9 bp upstream