rs32712172 SNP Detail

Summary

• ID
  rs32712172
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43981694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCCGGT AAATGTCCCA
  GGAAGTGGGG TCTGACAGTC AGGATGCCAC TGGATTCAGG CATCCTTATC AGACTCACGA
  TGCTTCCTCT GGCCAAGTGG CCCCTGTTTC TCAGGTGATG AGACCTGGAG AAGCGTGCAG
  AGCTGAAATT CCCTGAGAGA AAGAGAGACA GAGACACACA CACAGAGAGA GAGACACACA
  S
  AGAGAGAGAG ACAGAGAGAG ACAGAGAGAG AGACTAGGTA GTGGGGAACT GAGCTCAGCC
  ACATAGGGAG TTCTTTGAAG TGGGGCTGGA ACCTAAGTAC CCCAAGCAGG GGGACAGAAG
  TTCTAACCCC TTCACAGGCA TCACATCCAA AGAGACTATC TGCCCCAGAA GTCAGGTATC
  AAGATGTGTA ACTTCACTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45684811	mCV23628804	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss146245229	ENSMUSSNP772410	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321099690	CHEV_4_43994566	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32712172					SNP	G	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43981694 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	1789 bp upstream
Cpgi14203	CpG island 14203	752 bp proximal
Cpgi14204	CpG island 14204	1988 bp proximal
Rr398234	regulatory region 398234	799 bp upstream
Rr591125	regulatory region 591125	1452 bp distal
Rr591126	regulatory region 591126	378 bp proximal
Rr591127	regulatory region 591127	875 bp proximal
Tssr37010	transcription start site region 37010	1779 bp upstream
Tssr37011	transcription start site region 37011	1802 bp upstream