rs32710328 SNP Detail

Summary

• ID
  rs32710328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134999747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGGCTGG GGCTCGCGGC
  GGGGTGGGGT CGGACACGGC GAGGAGGGTG ACAGTACCCA CGCGGCGCAG CTGAGGCGCG
  TCCCGCCCTG CGGAGTCGCC TCCCTGTCGC CGCGCCCGCA GGGTCCGCCA AGGTCCCGCT
  GCGAGGCGGG AAGGCGCGGA GCCCAGACAA TGGGAATGAG CGCGGGAGGT ACGGCGCCGC
  Y
  TCGGGCTGCG GGGATGCCGC GTGGGGGCGC TTCGGGGTGC GGGGACGTCA GCCCGCGTCG
  CTCGGGACGG TGAGCGCTCA CCTTGACGAA GAGCTCGATG AGGGGCTCTT TGTCCTCCTC
  CTTCAGCCCG TTCAGGGGCA TCGACAGCGC CATGGCCGGT TGGGCTGGGC TCCGCGGACG
  GCGGCTGCGG CTGTGGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45684597	mCV25366232	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147543273	ENSMUSSNP4184854	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32710328					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134999747 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	454 bp upstream
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	758 bp distal
Rr601977	regulatory region 601977	712 bp distal
Rr601978	regulatory region 601978	13 bp proximal
Rr601979	regulatory region 601979	356 bp proximal
Rr601980	regulatory region 601980	368 bp proximal
Rr601981	regulatory region 601981	672 bp proximal
Tssr39607	transcription start site region 39607	254 bp downstream
Tssr43972	transcription start site region 43972	1268 bp upstream
Tssr43973	transcription start site region 43973	270 bp downstream
Tssr43974	transcription start site region 43974	298 bp downstream
Tssr43975	transcription start site region 43975	318 bp downstream
Tssr43976	transcription start site region 43976	345 bp downstream
Tssr43977	transcription start site region 43977	362 bp downstream