rs32709538 SNP Detail

Summary

• ID
  rs32709538
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41361316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT GGACAGGTGT TTTTCTGTTG
  W
  GTTTAACATA AAGTTCAATA TCTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46181511	mCV24417944	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss144675420	ENSMUSSNP4797536	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss322633637	CHEV_8_41993633	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32709538					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41361316 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77026	transcription start site region 77026	1998 bp downstream
Tssr77027	transcription start site region 77027	1669 bp downstream
Tssr77028	transcription start site region 77028	1564 bp downstream
Tssr77029	transcription start site region 77029	1394 bp downstream
Tssr77030	transcription start site region 77030	368 bp downstream
Tssr77031	transcription start site region 77031	114 bp downstream
Tssr77032	transcription start site region 77032	126 bp upstream
Tssr77033	transcription start site region 77033	389 bp upstream
Tssr77034	transcription start site region 77034	452 bp upstream
Tssr77035	transcription start site region 77035	1383 bp upstream