rs32701133 SNP Detail

Summary

• ID
  rs32701133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150669090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCTTTGT ATCCGAATGA
  TCTGGGGACA CTGGCCTGTA AGCTAGCAGA GGGCATTATG ATAAAAACTT GTTTGATTCA
  TGTTGTAGAG TCTCAGTCTC TTGGGAAAAC AGTGGCCCCA CTTCCTTCCA GACTAGCCTG
  TCAGAACTGA GTTGTTTGAA GACAAAATTC TGTAATGACC AGCACTGCTC TGTGGTCCTC
  R
  AGTCTATAGA AGATCCAAAT CACCAAACAG AAATTGGCCA CAGAAGGAGT CTCTGCCAAA
  TACGGTTTCC TCAGGTTCCC CAAGGTGACT GAATCTGCAC CTACACTCTG TAGTGCCAGC
  TGACTGCCCG TGTATGCATT AGTTTCCCGC TCCAGCCAGA GCTTCTTTGG ATGGTAGAGA
  TTTTGAGGTG AGGGTTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716512	NES11011644	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32701133					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716512	NES11011644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150669090 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr377423	regulatory region 377423			within coordinates
Rr605342	regulatory region 605342			265 bp distal
Rr605343	regulatory region 605343			1224 bp proximal
Rr605344	regulatory region 605344			1755 bp proximal