rs32701130 SNP Detail

Summary

• ID
  rs32701130
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150668961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGCTCGG TTTTTAGGCA
  GTGTTTACTT TTCATAGAAA GAAAGTGAGA TTTTACTCCT ATAATTCCTG ACTTACTGTA
  GGATTCTTTG GCCAGCACAC AGGGATGAAG TCTCATGTAA ATCTGTGCAA TCCCTTTGTA
  TCCGAATGAT CTGGGGACAC TGGCCTGTAA GCTAGCAGAG GGCATTATGA TAAAAACTTG
  W
  TTGATTCATG TTGTAGAGTC TCAGTCTCTT GGGAAAACAG TGGCCCCACT TCCTTCCAGA
  CTAGCCTGTC AGAACTGAGT TGTTTGAAGA CAAAATTCTG TAATGACCAG CACTGCTCTG
  TGGTCCTCAA GTCTATAGAA GATCCAAATC ACCAAACAGA AATTGGCCAC AGAAGGAGTC
  TCTGCCAAAT ACGGTTTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716509	NES11011643	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32701130					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716509	NES11011643	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150668961 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr377423	regulatory region 377423			within coordinates
Rr605342	regulatory region 605342			136 bp distal
Rr605343	regulatory region 605343			1353 bp proximal
Rr605344	regulatory region 605344			1884 bp proximal