rs32700520 SNP Detail

Summary

• ID
  rs32700520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150650380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCTCACC TGGCTGTGAG
  GATGCATGCA TAGAAAACAA TGAGGCCTTG CTTCCAAGGT GCAGAGTACT AAAGAAACAA
  GTGTCAGTCT CAGCAGCCAT GTGTGCAGGT GATGGCTGGC CCTGGAGCAT TAAGCAGGGC
  TACTTAGCCC TGGCAGTATG ACCCAGCCAG TTACCACAGT TTAAATATAC ACCTATTCTT
  Y
  CTCTGTCACC CTTGGCAGCC TGGCATTCTG ACATTACACC TTCAGGACCA GAGAAATAAT
  ATACAAGGCC TTGGAAGTGT TGAGTTCATG TTCAGTTGCT GGAAGACATA AGAAACAGAC
  CATGATCTTA GTGGCTTAGC ATTCCTCTCT GTAAACAAGT CAGCATGTTA ACTATTAAAT
  TACTATCGAA AACATGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716401	NES11011725	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32700520					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716401	NES11011725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150650380 () rs orientation: forward

Symbol	Name	Function Class
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	258 bp upstream
Rr605335	regulatory region 605335	within coordinates
Tssr40415	transcription start site region 40415	532 bp upstream
Tssr40416	transcription start site region 40416	635 bp upstream
Tssr44743	transcription start site region 44743	941 bp downstream