rs32700515 SNP Detail

Summary

• ID
  rs32700515
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150650220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTCTG CCGCCTGCTG
  GGATTAAAGG CGTGTGCCAC CACGCCCGGT GTCCTGGTCA TATTTCTAAA GCCAGAAGTA
  AAGTTTTCCC CACTAGGAAC AAGCCTGTAA CTCACTCACT CATAAACCGA GTTACCATGG
  CTAAGTACAG ATTTGTGTTT GGGTCTCACC TGGCTGTGAG GATGCATGCA TAGAAAACAA
  W
  GAGGCCTTGC TTCCAAGGTG CAGAGTACTA AAGAAACAAG TGTCAGTCTC AGCAGCCATG
  TGTGCAGGTG ATGGCTGGCC CTGGAGCATT AAGCAGGGCT ACTTAGCCCT GGCAGTATGA
  CCCAGCCAGT TACCACAGTT TAAATATACA CCTATTCTTT CTCTGTCACC CTTGGCAGCC
  TGGCATTCTG ACATTACACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716395	NES11011721	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32700515					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716395	NES11011721	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150650220 () rs orientation: forward

Symbol	Name	Function Class
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	418 bp upstream
Rr605335	regulatory region 605335	14 bp proximal
Tssr40415	transcription start site region 40415	692 bp upstream
Tssr40416	transcription start site region 40416	795 bp upstream
Tssr44743	transcription start site region 44743	1101 bp downstream