rs32700495 SNP Detail

Summary

• ID
  rs32700495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150668398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGAAGCT GTGTCGGTCT
  CCTTTGCTGC TTTTGCTCAG GGGTTCCAGG AGAGAGCATG TTCCATGTAC AACATGCTCT
  CTCTGTTTCT TTTTAAAATT GTGACACACT CTGGCTGTGT GGCCTAGGCT GACCTCTAAC
  TCCATTTTCC TGCTTCTTGA GTGCTAGGGT TATTGGTATA GGCCTCCATG TGAGGCTGTA
  Y
  AGCTGGTCTT GAGATTCTGT TAAGTTTAAA ATCATGCTGT CCAACCTCTG CGACTCTGCC
  TGGTGCAGGG CGGAGGCTCC CAGAGCAGCA TTGAGCAAAC AGCGGTGCTC CTTTGATCTT
  CTGTGGCTCT CCATTTCAAA AGAAAAAAGT GGTTGAAGCT TTAGAATTTT TTTTTTAATA
  TTGCTTTGAC CTCATATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716494	NES11011638	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32700495					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716494	NES11011638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150668398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr377423	regulatory region 377423			within coordinates
Rr605341	regulatory region 605341			1443 bp distal
Rr605342	regulatory region 605342			within coordinates
Rr605343	regulatory region 605343			1916 bp proximal