rs32699772 SNP Detail

Summary

• ID
  rs32699772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150650069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCAACAA CTGTTCTTAA
  CTGCTGAGTC CTCTCTCCAG CCCCTGGTCA TTTTTTTTTT TTTTTTTTCC CAAGACAGGG
  TTTCTCTGTA TAGCCCTGGC TGTCCTGGAG CTCACTTTGT AGACCAGGCT GGCCTCGAAC
  TCAGAAATCC GCCTGCCTCT GCCGCCTGCT GGGATTAAAG GCGTGTGCCA CCACGCCCGG
  Y
  GTCCTGGTCA TATTTCTAAA GCCAGAAGTA AAGTTTTCCC CACTAGGAAC AAGCCTGTAA
  CTCACTCACT CATAAACCGA GTTACCATGG CTAAGTACAG ATTTGTGTTT GGGTCTCACC
  TGGCTGTGAG GATGCATGCA TAGAAAACAA TGAGGCCTTG CTTCCAAGGT GCAGAGTACT
  AAAGAAACAA GTGTCAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716392	NES11011720	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32699772					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716392	NES11011720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150650069 () rs orientation: forward

Symbol	Name	Function Class
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	569 bp upstream
Rr605335	regulatory region 605335	165 bp proximal
Tssr40415	transcription start site region 40415	843 bp upstream
Tssr40416	transcription start site region 40416	946 bp upstream
Tssr44743	transcription start site region 44743	1252 bp downstream