rs32699316 SNP Detail

Summary

• ID
  rs32699316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150693774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACGTCA GAGCGCTCCC
  TGGCAGCTTT CCTGAGTTCC CCTTATTGTT CAGTTAGCAC TAGGTGGAGC TCAGCTGAGG
  TGCACACTTA CCTGGGCATG AGTGTTGTAG GCTTTGGTGG AAGTCCCCTG CCCTCCCCAG
  CCTGGGACTG TGCTTCATTT GTGCAGCATT GGTGGTAAGT GGCATTGTGT TAGTATTGAA
  Y
  GGTTAGGAAG GTTGACGCAC ATCCACAGCT TCAAGAGATG GGTACATTAG TCAGGTCCTG
  CTTCATAGAC CTCTATTAGG ATCTGATGAC AGGCATGGCA GCTCACTTCT ATACTCATAG
  AACACTGGTG TTGGGAGCAA GAGGGTCATG AGTTCAAAGT CAACCTGGGC TATACAGTGG
  GACCCTGTCT CCAAAATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716845	NES11011433	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32699316					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716845	NES11011433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150693774 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr605351	regulatory region 605351			1972 bp distal
Rr605352	regulatory region 605352			1934 bp proximal