rs32699020 SNP Detail

Summary

• ID
  rs32699020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82457881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATTAAT GATAGTCTAA
  ATGGAAACAG GACAAGATTA TCAAACCAGA TTCCTCTCTT GATGAGTAGT TCAGTTCTTT
  GGGCAATTCC ATACCTTTCC AGAATAGATG CCAACTCTTC TACAGATAGG GAGAAGATAG
  AAACCCCCAA ATGCCTACAT AAGTAGAGCC AGCAGTAGCT GTGTGCTCCC AGGCTAGGTC
  R
  AGGAAGAAAG CAGAAAGTGG TAAGAATGTA CACAGCCTAA GAAATACATA GCACATAAAG
  GAACTGAAGA AATACATAGC ACACAAAGGA ACTGAAGGCA GAGGCCTGTT CTCAGGTTCC
  AATAAGATGA CCTACAAAAA CTACATTTAA TATGGTTAGA TCTCTCTCTC TCTCTCTTTT
  TTTTTTAAAG AAACAAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716477	NES10748253	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32699020					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716477	NES10748253	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82457881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13290	CpG island 13290	1830 bp distal
Gm64983	predicted gene, 64983	within coordinates
Rr578786	regulatory region 578786	2000 bp distal
Rr578787	regulatory region 578787	241 bp distal