rs32698879 SNP Detail

Summary

• ID
  rs32698879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43958517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GCACTCAGGT CCTTTCCCCT
  Y
  CGTGTCCCGG TCCAGTCTTC ACTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45682052	mCV24934006	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146245010	ENSMUSSNP5809385	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321099577	CHEV_4_43971389	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32698879					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43958517 () rs orientation: forward

Symbol	Name	Function Class
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr367610	regulatory region 367610	1130 bp downstream
Rr398233	regulatory region 398233	1013 bp upstream
Rr591111	regulatory region 591111	815 bp distal
Rr591112	regulatory region 591112	1141 bp distal
Rr591113	regulatory region 591113	5 bp distal
Rr591114	regulatory region 591114	within coordinates
Rr591115	regulatory region 591115	998 bp proximal
Rr591116	regulatory region 591116	1281 bp proximal
Tssr37004	transcription start site region 37004	1021 bp downstream
Tssr37005	transcription start site region 37005	990 bp downstream
Tssr37006	transcription start site region 37006	782 bp downstream