rs32698499 SNP Detail

Summary

• ID
  rs32698499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150671821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACTTCAA TTTAAAAATG
  TTTTCATTAA ACAGAATTGG CTTCACACTT ATAATGCTGT TTAGACTGCC CTGTCTCCAT
  CTCCCAAGTG CAGGGGTTAT AGGCATGAAC CACCACTGAA CAGGCAAACA TTTTCTTGTT
  TTGTGGGGTC AGGGAGCAAA CTCAGGGCTA TGTGCTACTG CCGTTCAAAG CTTTGACATT
  Y
  TGAGTGTGTT GTTTCCTCTG TGATGTTGCT GAACACAATA AATGTGACCA GGAAGCTGTA
  TTGTGATAGG GTTTTTTGCA TGGTTGTTGA AAATAGAGAG CTCAAAGTTG AATTTTAAGG
  CTTAGTTTTT CTATTCAGTA CTTAAATCCA TGAAATATGG GGCCAAAAAG GACTCTGACT
  AAGTTAAACT GAAAATCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716536	NES11011614	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32698499					SNP	C	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716536	NES11011614	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150671821 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr605343	regulatory region 605343			1249 bp distal
Rr605344	regulatory region 605344			673 bp distal
Rr605345	regulatory region 605345			805 bp proximal
Rr605346	regulatory region 605346			1032 bp proximal