rs32697630 SNP Detail

Summary

• ID
  rs32697630
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150670940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGATAA TCCCTCATAG
  GCAAGTCCAG AGACTTAATT CCTAGGTGAT TGTTGATCTG TTAACTGACT ACAAGTATAA
  ACCACGGTCT TGACCTCCTG ATCATCCTGC TGTCACTTCC CCAGTGATGG TGTCACAGAC
  ATTCGCCCTA GCCCCTAACC TCTAACCCTA AGCTCAAATG CAGTTTGCTG CATATCACAC
  W
  CTACGCAGTG AGCTTACTTC TCATTCCTAG TAGTGATGAC TTGTGGTGTA CTAGATAATA
  TGTAATCTGG AAACAGTGAC TGCCCAAAAG TCTAACATCA TAGTTATGGA TAAAGCTTTT
  AGTTTAAGAT GAGGACCAAA ATAAGGACGC TCAATCTTAC TGCATCCCGC ATAGGTGTGG
  GTGTGTGTGT GTGAGAGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716524	NES11011626	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32697630					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716524	NES11011626	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150670940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr377423	regulatory region 377423			1162 bp downstream
Rr605343	regulatory region 605343			368 bp distal
Rr605344	regulatory region 605344			within coordinates
Rr605345	regulatory region 605345			1686 bp proximal
Rr605346	regulatory region 605346			1913 bp proximal