rs32696388 SNP Detail

Summary

• ID
  rs32696388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150571680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTACCG AGCACCATGT
  CCTGCTCTAA GAATCTGTAA GAACTCATGT TCTTGGAAAA GATTTTCGTT TTTTGACTCC
  ATTCCATTTC TGAGAAACAG TTGGTCCTGT CCTTTTTTCC AATCTTTTAT GTTTTGAGGG
  AATTTTGTGA TGTTTCTTTA AGTTATAACT GAGTGGTGTA AAGATCATTT AGTTTGCAGG
  Y
  GGGAGTAACC TGCGTACCTG CTATTTCATA ATGATAAACA GTGCTTTGTG GGAGGCGAAC
  GCTGGATGGG TAGACAGGCT TGTTCTGCAG GGTTTTACCA GGGCCTCTCT TGGCTGCTCT
  GTGGGCAGGG TGACTGAGTA CTTTGGTCCT CAGTATTGCT GTAGTGAGAT GGACTTGTTA
  CATGGCTTTA GAAATCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46715415	NES11012437	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32696388					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46715415	NES11012437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150571680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				mRNA-UTR
Rr605316	regulatory region 605316			739 bp distal
Rr605317	regulatory region 605317			680 bp proximal
Rr605318	regulatory region 605318			1181 bp proximal
Tssr40412	transcription start site region 40412			1145 bp upstream