rs32689337 SNP Detail

Summary

• ID
  rs32689337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150572218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTATGC TGAGGTGTTT
  ATAGTGGATG GTCTTTAGGC ATTTGGGGGG AGGGGCATAT GCATGCACGT TCACTTAACT
  GAGGGGGGGT TAGTGTCAGC CAACCATTAT GGTTCATGCT AGGTTAGTGC TCTGCTGCTG
  AGGTTATTTC CCCCCCCCCC CCCCATCCTT GATCTGAACC TTGTTGCTGT TTTTATTGTT
  Y
  CAGTTCATTC TTGGAGACCT GGCTGGGCTC ATATTAATTA CCTTAGAGGA TGCTGTAATT
  TAATCACTTG GAGATTTGGG GGTTCTTTTT GCATGAAGTA TGGCATTCCT TGTGTGCTGT
  ATTAGTGCTG TCTCCATTGT GGCCATACCT ATGTGGCTAG CTTGCTTGTT TGGTCTTTTT
  GTCAAGTGCG TTTTCAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46715420	NES11012439	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32689337					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46715420	NES11012439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150572218 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				mRNA-UTR
Rr605316	regulatory region 605316			1277 bp distal
Rr605317	regulatory region 605317			142 bp proximal
Rr605318	regulatory region 605318			643 bp proximal
Tssr40412	transcription start site region 40412			607 bp upstream