rs32688889 SNP Detail

Summary

• ID
  rs32688889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134878577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA CATACCTAGT ACCCCGCTGT
  Y
  GTACACACAG CGCCTGATTT CGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45681008	mCV22865513	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss321351027	CHEV_4_134707181	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32688889					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134878577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	280 bp distal
Cpgi15062	CpG island 15062	12 bp proximal
Cpgi15063	CpG island 15063	563 bp proximal
Rr601932	regulatory region 601932	261 bp distal
Rr601933	regulatory region 601933	626 bp distal
Rr601934	regulatory region 601934	740 bp proximal
Runx3	runt related transcription factor 3	Intron
Tssr1337	transcription start site region 1337	1007 bp upstream
Tssr39602	transcription start site region 39602	1270 bp upstream
Tssr39603	transcription start site region 39603	1436 bp upstream
Tssr39604	transcription start site region 39604	1728 bp upstream