rs32686538 SNP Detail

Summary

• ID
  rs32686538
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150546887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGAAAA ACTAATTTAC
  ATAAAATGGG AAATGTAATG TTTCAGTGTT TCTACTGATT TTCTCATTTC TTAACCAGCT
  ATTTGAATTA TTTATGACCA GTTAGGAGTG TTAGCTGTAA TTAGATTTCT GTTATTATGT
  GGGCAAACTT TAACTTAAAG CAGTGGCTTC TAACCCTGCA AGTCTTAAAT GCAAATGTTT
  K
  CTCTGAAAGT TATTTTCCCA TGTTAACCAG GCCTACTATC CTGAAGCACA ATTCAGAAAG
  CAGCAGAACA GGAGGCTCAG CTCTTGGAAC CGGGCAATGT TGCCAGGCTC CTTTAAAGTC
  GATGTGACTG GTGGCAGGGG GCCAAATGTT CCAGCTCCAG AAGAAAGTGA AATTAAAAGT
  ACTGTTCATT TTCTGAATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46715070	NES11012649	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32686538					SNP	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46715070	NES11012649	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150546887 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Gm68777	predicted gene, 68777	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605306	regulatory region 605306	1086 bp distal
Rr605307	regulatory region 605307	678 bp distal
Rr605308	regulatory region 605308	281 bp distal
Rr605309	regulatory region 605309	within coordinates