rs32686534 SNP Detail

Summary

• ID
  rs32686534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150545740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTTGTT TGCCTGGCGT
  CCTGTGCTTA CTAAATGGCA GGTTTCATTG CTCCTGACTT TTTTCTTTGG TCCCCCTGCA
  CTTAGTGATT ATCTATCTGA CTTAGGGCCC AGGAGTGGGC CTGCTGCTCC TGTGGAAAGC
  AAGCTTTACA GGCTCTCTGG ACGTCCCCAT CCCCGGCTGC TGTCACTGAC CTTTTCTAGA
  R
  CACTCAGTCC CTAGCAGGCG CTCGTTAAAT ACTGATTGTA TGGTTTGATG AAAGAATGCC
  TTAAAATGAA TTAGCACTTA TTTTTGCCAG TTGTTTTCAC TTATTTCTGT AAGTAATCTT
  CTCTGGAAGT TTCTAGAGAC ATCTTTACCT GACAGTTGGT TTGACCTTCA CCTGGAATTT
  GGTTTGTCTG AAGTTGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46715064	NES11012647	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32686534					SNP	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46715064	NES11012647	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150545740 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Gm68777	predicted gene, 68777	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605305	regulatory region 605305	1484 bp distal
Rr605306	regulatory region 605306	within coordinates
Rr605307	regulatory region 605307	177 bp proximal
Rr605308	regulatory region 605308	640 bp proximal
Rr605309	regulatory region 605309	1090 bp proximal