rs32684909 SNP Detail

Summary

• ID
  rs32684909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150544613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTCCT CCTCCTCCTC
  CTCCTCCTCC TCCTCCGTCT CACTTTGTCT TTCCAGTGTG GTCTTGTCTT TCCTTTGACC
  ACTCACTGCG TCCCCTGGGC CTGTCTCTCT TCGTTCTTTG CAGACTGGCA CTGCTCACTT
  GGAACAGCAT CTGCTAGGAG AATTGCGTGC TTGCTTGTGT ATCTTTGTGA AGTTCATCCA
  Y
  GTTGTATGTT GATTTTCTTT CCTTGTTGTA TCATAAGGAT ACGATACAAT TTGTCCTAAT
  TCTACTGATG ATGGGTATTT AGACAATTGC AAAGATTCCA GCATATCTTC TGCAGTGGGC
  GTTCAGATCA GTGACAATAC AGGCTGTTGG AGAGTAGTCG CGGAGTATTG AATAGTAGCT
  TCATTTGACT ACTTGTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46715046	NES11012655	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32684909					SNP	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46715046	NES11012655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150544613 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Gm68777	predicted gene, 68777	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605305	regulatory region 605305	357 bp distal
Rr605306	regulatory region 605306	954 bp proximal
Rr605307	regulatory region 605307	1304 bp proximal
Rr605308	regulatory region 605308	1767 bp proximal