rs32679860 SNP Detail

Summary

• ID
  rs32679860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150413277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCTCCC CACTTTTTGC
  CTTTTCTTGA AAGGACTATT TTTTCTTCAT ACCAGAAGAG GGCATAGAAT CCCATTACAG
  ATGGTTGTGA GCCACCATGT AGTTGCTGGG AATTGAGCTC AAGACCTGGA AGAGCAGTCA
  GTGCTCGTAA CAGCTGACCT ATCTCTCCAG CCCCGATTTT TGCTTTTTTG ATCCTCTTTG
  Y
  TAAGTATCTT TTTGATAGCA TCTTGACATT TAGGTAAAAG GATAACATTT GCTAACTGAC
  AGAATTAGAA GGCTCTGAGT GCTTGCCTGA CATAAGGGCA ACCTTGGCTT CAAAACTGAG
  AACATCTGGG TGGAGAGGTG CACACCTTTA ATCCTAGCAC TCAGGAGCTG AGGCAGTCAG
  ATCTCTGTGA GTTTGAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46713609	NES10993703	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32679860					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713609	NES10993703	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150413277 () rs orientation: forward

Symbol	Name	Function Class
D030004A10Rik	RIKEN cDNA D030004A10 gene	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605276	regulatory region 605276	1124 bp distal