rs32678685 SNP Detail

Summary

• ID
  rs32678685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133850030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG TTCCAAGTTA GCCCTCATGC
  R
  GCCACTTCCT TGGCGCCTTA GAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45679179	mCV24805400	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147518434	ENSMUSSNP6626490	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss321345435	CHEV_4_133678634	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32678685					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133850030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367738	regulatory region 367738			1349 bp downstream
Rr367739	regulatory region 367739			1543 bp upstream
Rr370577	regulatory region 370577			694 bp downstream
Rr601567	regulatory region 601567			787 bp distal
Rr601568	regulatory region 601568			900 bp distal
Rr601569	regulatory region 601569			550 bp distal
Rr601570	regulatory region 601570			within coordinates
Rr601571	regulatory region 601571			1102 bp proximal
Rr601572	regulatory region 601572			1329 bp proximal
Rr601573	regulatory region 601573			1395 bp proximal
Rr601574	regulatory region 601574			1878 bp proximal
Tssr39532	transcription start site region 39532			884 bp downstream
Tssr39533	transcription start site region 39533			859 bp downstream
Tssr39534	transcription start site region 39534			1791 bp upstream
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant