rs32676197 SNP Detail

Summary

• ID
  rs32676197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82051705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCTTGA TCACTGCTAC
  CTGACATGAT ACTTCCTGAA GGGGGACAAC AGTCTAGGAA AAACAACAGA TTGCTCTTTC
  TTTCATTATG AACAAAAACT CAAAACTGCT CATCTTGAAG TGTCTCCGAG AGCATGCAAT
  AGAAAAGGTG AGCAGGGCTC CGACTAAGCC TGGCACTAGT CCGAATATAG ACAAGAATTA
  Y
  TTTGGAACCG ATGACCCTAA AAAACCATTA TGATAATTTA AATGTAGGTA ATCTATCTTC
  CTCTAAACCA TGCAATATGT TGGAAATCAA GAGGCATCTA ATCACTTCTG AGAGCGAGCT
  GGCAGCCATT TGATTTACCT CAGAAAATGT AAAGTGCTTT TTAAATGCAA AACGAAGGAA
  TAACTCCCAG AAAGCAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46713116	NES10751763	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32676197					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713116	NES10751763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82051705 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13288	CpG island 13288			474 bp proximal
Gm29921	predicted gene, 29921			2000 bp downstream
Gm65571	predicted gene, 65571			1817 bp downstream
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			236 bp proximal
Rr578751	regulatory region 578751			665 bp proximal
Rr578752	regulatory region 578752			1379 bp proximal
Tssr33784	transcription start site region 33784			1340 bp downstream
Tssr33785	transcription start site region 33785			1360 bp downstream
Tssr33786	transcription start site region 33786			1467 bp downstream