rs32675342 SNP Detail

Summary

• ID
  rs32675342
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150368278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACACTGT GGAACGCTTT
  CAGAAGACTC CTGTTTCCCT CCCTGCCTTT GCAGCCCTGC TTTCTGCTGC TTGCTCTTTT
  CCATCTGTGT AAAGATCAAC TCTGTCATGG TGGTCTTGCA CTCTCTGCTT TCCATTCCTT
  GAGACCCCTG GCTCTGTTAG GGGCAGATTT GTTCACTTGA TTTTTATTTT GCTGAGTGTG
  W
  CTGGGGCCTT TATAAGTAGA AATAGGTTGT CTCAGTTAAA ATGATAAAGA CTATTTGAGG
  TTAATATGTT GCAGTATTTT GTGTGAGTGT GTGTGAGTGT GTGTGTGTGT GTGTGTGTGT
  GTAAGAGAGA GAGAGGGAGA GAGAAATTGA TTTGATTGAT GGTCCTTGAT CCTTGACTTA
  TCAATATAGT TTTTCCCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46713111	NES10996832	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32675342					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713111	NES10996832	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150368278 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15350	CpG island 15350	1424 bp distal
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr377419	regulatory region 377419	1548 bp downstream
Rr605265	regulatory region 605265	1223 bp distal
Rr605266	regulatory region 605266	38 bp distal
Rr605267	regulatory region 605267	113 bp proximal
Rr605268	regulatory region 605268	348 bp proximal
Tssr40404	transcription start site region 40404	1015 bp downstream