rs32675340 SNP Detail

Summary

• ID
  rs32675340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150367889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCTAAA TTGCAAACCG
  TTTTTGATTT TGATGGCCTA GTCTGGGTGA AAGCCTGCCT TCCAGTTTTC TCTGTTGTTG
  AGGTCGAAGG GAAGAGGCAG AGGCAGAAGC AGACACACAC AGAGACACAG ACACACCACA
  CACACACACA CACACACACA CACACAACCA GGCAGAGGGC TCATTGTTCT TCCATACAGA
  Y
  ATCCATTCTC TCTCTCCCAT ATTTGGGGCT AGGTTTGCAC AGACAAACAC GGCTCTTTTG
  GGGAGGGATG AGAGGAGATG GGGGATGGGA AGGTGCTTTT CTTGTTCAGT TTTCTTTCAC
  CCATTTCACA TCTGCCTTTT TTTTTTTTTT TGCAACCTTG CAAGGCAGAT GAGTACATGG
  GACACTAAAG GACACTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46713108	NES10996831	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32675340					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713108	NES10996831	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150367889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15350	CpG island 15350	1035 bp distal
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr377419	regulatory region 377419	1159 bp downstream
Rr605263	regulatory region 605263	1776 bp distal
Rr605264	regulatory region 605264	1948 bp distal
Rr605265	regulatory region 605265	834 bp distal
Rr605266	regulatory region 605266	within coordinates
Rr605267	regulatory region 605267	502 bp proximal
Rr605268	regulatory region 605268	737 bp proximal
Tssr40403	transcription start site region 40403	1799 bp downstream
Tssr40404	transcription start site region 40404	626 bp downstream