rs32674310 SNP Detail

Summary

• ID
  rs32674310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150367121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGAGGAA GACTCCTCCT
  TTGTGTCTCT CTTCTCAGGC TCTGTGATTC CAAAATTAGG GAACCAAATA CCACTTGGAG
  CGGCGTAGAA TTCTGTCATG ATTTTAAGTT CTGCTGTCTG AAGGAGGGTG CCTTCTTTCT
  TTCTTTATAT TTTTTTAGGG TTATGGGAAG AAGGTAGTTT TACATCGAAT GGGGTGTGTG
  Y
  TGTGTTGAGG GAGTATTGCA GGTTTCCTTT GAAACTGTTC GCTTGAGAAG TTGTTGAAAT
  GAAAATAAAA TGATTCATTG TTGAATAGTC ATTATCCTCT GTCTCTTTTC CAAGGTTTGC
  TTACTTTTTT TTTTTTTTTT GATTACAGAC TTCAAACATT GATTTCAGCA GAATGTGCCC
  TTGAGAAACT GGGTGCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46713096	NES10996825	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32674310					SNP	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713096	NES10996825	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150367121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15350	CpG island 15350	267 bp distal
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr377419	regulatory region 377419	391 bp downstream
Rr605263	regulatory region 605263	1008 bp distal
Rr605264	regulatory region 605264	1180 bp distal
Rr605265	regulatory region 605265	66 bp distal
Rr605266	regulatory region 605266	405 bp proximal
Rr605267	regulatory region 605267	1270 bp proximal
Rr605268	regulatory region 605268	1505 bp proximal
Tssr40403	transcription start site region 40403	1031 bp downstream
Tssr40404	transcription start site region 40404	139 bp upstream