rs32674306 SNP Detail

Summary

• ID
  rs32674306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150366830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGCCGA GGCGGAATGC
  GAAGGGTGAG AGTGGAGGCG AGCCCTCGGG GAACCATGGG CCGGACGCTG CCTTTGGTCC
  TGTGCGAGCC AGGTGACTGT ACTACGTGCT TCTTGACCCC TGCTCTCTCT TGGCTTCTTA
  GGCACGCTCT GGAACTAGTC TGAGGTTAAA CTGTTACACG CCACTAGCTG AGCAGCTCAA
  M
  TGTGAGAGGG AAGGACCCGA AGCTGTGCAT TTCTTGGATA TTTGTGAATG TGGGGGTCTG
  GGAACGGACT CATTAAAGTC TCATTTCACA TTAGGAGGAA GACTCCTCCT TTGTGTCTCT
  CTTCTCAGGC TCTGTGATTC CAAAATTAGG GAACCAAATA CCACTTGGAG CGGCGTAGAA
  TTCTGTCATG ATTTTAAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46713090	NES10996821	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32674306					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713090	NES10996821	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150366830 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15350	CpG island 15350			within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr377419	regulatory region 377419			100 bp downstream
Rr605263	regulatory region 605263			717 bp distal
Rr605264	regulatory region 605264			889 bp distal
Rr605265	regulatory region 605265			within coordinates
Rr605266	regulatory region 605266			696 bp proximal
Rr605267	regulatory region 605267			1561 bp proximal
Rr605268	regulatory region 605268			1796 bp proximal
Tssr40403	transcription start site region 40403			740 bp downstream
Tssr40404	transcription start site region 40404			430 bp upstream