rs32674185 SNP Detail

Summary

• ID
  rs32674185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135001065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTTTAC ACCCTGAGGA
  CAGGGGCCTG AGACACGCGG TCTACTGCGG AATTGCCGTC AGTGAATGTC ACCTTTGGGA
  AATTTGCCTT CTGGTTTTCC TTAATCTGCT CATTCTGTGG TACCTCCCAG GCTAGGGTGA
  TGAGTGAGTT GATTAGAAAG GCTAAATTGG GGGATGGAAG CGGGGTGTCA TGGTTATCTC
  R
  CATCCTCTGT GCCTAGTGTG GATCAGAGTG CTTCAACAAA TTGGAATGAT GTGTAAAAAT
  GCAGTGCAAC CTGCAACTAC TTTATCCTCA CTCAACCCCA TCTCCAAGTT GCTAGATTCT
  GTGAGAAGGA TGCTGTGCCC CAGCAATTAG ATCCATCAAT GCTCCGGAGT AAGGCTGTTT
  TAAGTTCACA GTTTGGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45678922	mCV25366075	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss147543314	ENSMUSSNP5324065	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32674185					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135001065 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	994 bp upstream
Cpgi15068	CpG island 15068	131 bp distal
Rr398589	regulatory region 398589	563 bp downstream
Rr601975	regulatory region 601975	951 bp distal
Rr601978	regulatory region 601978	1284 bp distal
Rr601979	regulatory region 601979	941 bp distal
Rr601980	regulatory region 601980	450 bp distal
Rr601981	regulatory region 601981	625 bp distal
Rr601982	regulatory region 601982	790 bp proximal
Tssr39607	transcription start site region 39607	1572 bp downstream
Tssr43973	transcription start site region 43973	1037 bp upstream
Tssr43974	transcription start site region 43974	1007 bp upstream
Tssr43975	transcription start site region 43975	981 bp upstream
Tssr43976	transcription start site region 43976	962 bp upstream
Tssr43977	transcription start site region 43977	935 bp upstream