rs32672486 SNP Detail

Summary

• ID
  rs32672486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82053615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTGGTG GGGAACTTTC
  TTTCTCCTTG GGTGGCTTTG GTGGCCTGGC TTTTAGGTTT GAGGCTACTC TACTCATTTC
  AAAGGTAATT TTGTGGTCAC AAGAATATTT TTTTTTTTTT GAGTAAGGTC TTGCCTCTAT
  TTGGTTCACT ACACTCAGCC CTATTTGCTG TTAATGCATG TGTGTGTGCA TAACTGTTCT
  Y
  TTATTTTTAA ATCATTGTTC ATACACACAT ATGTGTACAC ACAAAAATGC ACACACACAC
  ACACACACAC ACACACACAC TTACTCCTGG TGTCTTTTTA ATCCTCCAAG TCCAAGAAGT
  CTAAGACAAA AAGTTATCTT GACATATCTA CTTTCGACTC ATCATCGACT CTGGTCTCAC
  TGAGGAGGCC CCACTCATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46713164	NES10751705	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	T		T	T	T	T		C
ss320817906	CHEV_3_81950230	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32672486					SNP	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713164	NES10751705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82053615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13288	CpG island 13288	573 bp distal
Gm29921	predicted gene, 29921	90 bp downstream
Gm65571	predicted gene, 65571	within coordinates
Gucy1a1	guanylate cyclase 1, soluble, alpha 1	519 bp upstream
Rr578750	regulatory region 578750	1246 bp distal
Rr578751	regulatory region 578751	745 bp distal
Rr578752	regulatory region 578752	146 bp distal
Tssr33784	transcription start site region 33784	554 bp upstream
Tssr33785	transcription start site region 33785	465 bp upstream
Tssr33786	transcription start site region 33786	425 bp upstream