rs32671840 SNP Detail

Summary

• ID
  rs32671840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82053120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCGTCCC CTTCTCCAGT
  CCCCAAACAG TAGAAAAGCA AACAGCTGAG CGAACCCACC ATGATGCGAT CACAGGAGGC
  CAGGGGCATC GGGCCAAAGG TGTCTTTGCT CCGCTGGCTC CCCAGGCTGT GCACTGCTGC
  TCTTCGCCTT GGGGTCCGGT CCGGCTGGCA GGCACTGGAG GAGGGCTGCC TAGAAGGCGG
  Y
  GTGTGAGAAA CCCGCGGCTC TGAGTCCCTC CCACTTCTCC CAGGCTCAGC TAGAGAACTG
  AGTCTGCTCC CGCCCAGTCG CCATCCTCCA AACCACCAAA GGCAGACACA CACACACACA
  CACACACACA CACACACACA CACACACACA CACACACACA CACACATAGC AGGGAAGGGG
  ACAAGGAAGA GAAAAAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46713155	NES10751777	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32671840					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713155	NES10751777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82053120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13288	CpG island 13288	78 bp distal
Gm29921	predicted gene, 29921	585 bp downstream
Gm65571	predicted gene, 65571	402 bp downstream
Gucy1a1	guanylate cyclase 1, soluble, alpha 1	mRNA-UTR
Rr578750	regulatory region 578750	751 bp distal
Rr578751	regulatory region 578751	250 bp distal
Rr578752	regulatory region 578752	within coordinates
Tssr33784	transcription start site region 33784	59 bp upstream
Tssr33785	transcription start site region 33785	within coordinates
Tssr33786	transcription start site region 33786	52 bp downstream