rs32671837 SNP Detail

Summary

• ID
  rs32671837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82052907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGCGGGT TCACCCAGGG
  CACTCAAGGC CACACAGAGC ACATCATGGT TAACCTGCGC TAGTGGCGCG GAGGGACCCA
  CGAAACACCC CCAGAGCTGG TTCCCACCGT GCTGTAGTCA CTTCTCGCCT TTGTTTTTCC
  CTGCCATGAC CCAAAGAATT CTAGTCTGTC TCTTCCCTGC CGCACAGGAC TTCTTCCCAC
  R
  TCTCAGTACC GTGCCTCGTC CCCTTCTCCA GTCCCCAAAC AGTAGAAAAG CAAACAGCTG
  AGCGAACCCA CCATGATGCG ATCACAGGAG GCCAGGGGCA TCGGGCCAAA GGTGTCTTTG
  CTCCGCTGGC TCCCCAGGCT GTGCACTGCT GCTCTTCGCC TTGGGGTCCG GTCCGGCTGG
  CAGGCACTGG AGGAGGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46713152	NES10751776	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32671837					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713152	NES10751776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82052907 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13288	CpG island 13288			within coordinates
Gm29921	predicted gene, 29921			798 bp downstream
Gm65571	predicted gene, 65571			615 bp downstream
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			538 bp distal
Rr578751	regulatory region 578751			37 bp distal
Rr578752	regulatory region 578752			177 bp proximal
Tssr33784	transcription start site region 33784			138 bp downstream
Tssr33785	transcription start site region 33785			158 bp downstream
Tssr33786	transcription start site region 33786			265 bp downstream