rs32671502 SNP Detail

Summary

• ID
  rs32671502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43958293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA CCTCCTGAGG CCCCTCCGTG
  Y
  CAGGCTGGGT GCTGTGCAGA GCTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45678498	mCV24934016	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146245005	ENSMUSSNP931572	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321099576	CHEV_4_43971165	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
rs32671502					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43958293 () rs orientation: forward

Symbol	Name	Function Class
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr367610	regulatory region 367610	906 bp downstream
Rr398233	regulatory region 398233	1237 bp upstream
Rr591111	regulatory region 591111	591 bp distal
Rr591112	regulatory region 591112	917 bp distal
Rr591113	regulatory region 591113	within coordinates
Rr591114	regulatory region 591114	220 bp proximal
Rr591115	regulatory region 591115	1222 bp proximal
Rr591116	regulatory region 591116	1505 bp proximal
Tssr37004	transcription start site region 37004	797 bp downstream
Tssr37005	transcription start site region 37005	766 bp downstream
Tssr37006	transcription start site region 37006	558 bp downstream