rs32670297 SNP Detail

Summary

• ID
  rs32670297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82052228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC CTCGGAGGAA AGCCCGCATG
  R
  GGGCCACAAG CTGGACTCTT AGGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46713131	NES10751769	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A	G	A	A	A		G	A	A	G
ss320817896	CHEV_3_81948843	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs32670297					SNP	G	G	A	A	A	G	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713131	NES10751769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82052228 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29921	predicted gene, 29921			1477 bp downstream
Gm65571	predicted gene, 65571			1294 bp downstream
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			within coordinates
Rr578751	regulatory region 578751			142 bp proximal
Rr578752	regulatory region 578752			856 bp proximal
Tssr33784	transcription start site region 33784			817 bp downstream
Tssr33785	transcription start site region 33785			837 bp downstream
Tssr33786	transcription start site region 33786			944 bp downstream