rs32670027 SNP Detail

Summary

• ID
  rs32670027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150305844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGTCAA GGGTCTTCCA
  GAAAATTTCA TCACACAAGG ACTTTGGAAC ACTTTCAGTC TGCCCAGCCT CAGCAACTGA
  GTCTTTCTGG GAACCAAGTC TTCCTCAGGC TCCCTCCCAG TGCCTAGCTG TCCCGGATCC
  ACTCGGGTCC CCTGTGCAGC CACTGTCAGC CACCCAGAGC GTGAGCTTGC CTTGAGTTGC
  Y
  GTGGAGGCTG ATTACAGAGG TACCCCAGGG TGTATTGCTG CCTACCTGGC AGCCTGAGGC
  GTTATTAGCT GAACACTCAC TTACTAAGCT TGAACCTTAC CCTGCACAGC CTGTGGCCGC
  CTGACCTCTG GCTCCCAGAT CCTTCTGGGC AAACACCTCA CAGCCCTTTC TGCCTAGTCA
  AGGACCTTTG GGGAATATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46712559	NES11000236	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32670027					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712559	NES11000236	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150305844 () rs orientation: forward

Symbol	Name	Function Class
Rr605229	regulatory region 605229	1583 bp distal
Rr605230	regulatory region 605230	1662 bp distal
Rr605231	regulatory region 605231	1291 bp distal
Rr605232	regulatory region 605232	1046 bp distal
Rr605233	regulatory region 605233	within coordinates
Tssr44739	transcription start site region 44739	666 bp upstream