rs32669469 SNP Detail

Summary

• ID
  rs32669469
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150369153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGCATT CCAGGTGTAG
  GAAACTATAT ACACCAGCAG CTCTTTAAGA ATTTTTTTAG TATCATTAAA AAAATAAACT
  TACAGAAAGT AAAATCCTAG CATTAGAGAT TTCCTCTGGG ATTTAGACAC CCACTCTGCC
  AAAGAGGCTG AGGAGAAGTT GGGTTGAAAG TCTCACTAAA ATCAGTAGTT TTGTTAGGTA
  S
  TGGTGCTGTG TTCCAATACT GTTTTCAAAA ATCATATCAA TATTAATAAA CAGGAACCTG
  AGAGAATGGC TTATGGCTTC ATTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTAAAGAT
  TTATTTATTT ATTATATGTA AGTACACTGT AGCTGTCTTC AGACACACCA GAAGAGGGAG
  TCAGATCTTG TTACGGATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46713123	NES10996836	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32669469					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713123	NES10996836	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150369153 () rs orientation: forward

Symbol	Name	Function Class
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605266	regulatory region 605266	913 bp distal
Rr605267	regulatory region 605267	253 bp distal
Rr605268	regulatory region 605268	506 bp distal
Tssr40404	transcription start site region 40404	1890 bp downstream
Tssr40405	transcription start site region 40405	1816 bp upstream