rs32669466 SNP Detail

Summary

• ID
  rs32669466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150368995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCAGCCTT ATTATGTTAT
  TGGCTGTGTC TTGACATTAA TTTGTTCTGT TATCAGGGGT ATTTTCACAT TGTGTCTTCC
  AAGGACTCCT TTGAATTGAT GCTCTTTCTT TCTGTGAGAA GTGTAGTTTG TCTTAAACTA
  GAAAACAAAA TAGGGGCTTA TTTGCATTCC AGGTGTAGGA AACTATATAC ACCAGCAGCT
  Y
  TTTAAGAATT TTTTTAGTAT CATTAAAAAA ATAAACTTAC AGAAAGTAAA ATCCTAGCAT
  TAGAGATTTC CTCTGGGATT TAGACACCCA CTCTGCCAAA GAGGCTGAGG AGAAGTTGGG
  TTGAAAGTCT CACTAAAATC AGTAGTTTTG TTAGGTAGTG GTGCTGTGTT CCAATACTGT
  TTTCAAAAAT CATATCAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46713120	NES10996835	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32669466					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713120	NES10996835	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150368995 () rs orientation: forward

Symbol	Name	Function Class
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605265	regulatory region 605265	1940 bp distal
Rr605266	regulatory region 605266	755 bp distal
Rr605267	regulatory region 605267	95 bp distal
Rr605268	regulatory region 605268	348 bp distal
Tssr40404	transcription start site region 40404	1732 bp downstream
Tssr40405	transcription start site region 40405	1974 bp upstream