rs32668748 SNP Detail

Summary

• ID
  rs32668748
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135683311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCCC TCGGGCTGGG
  TGTCCCAAGC TCTACTCCTG GGAACCTTTC TCCAAGTGCA TGTGGTCAGA TGAGCCGGGC
  TTTCTCTCAG ACATACAGTG TTGACTGACC AAGTGTAGGT CAAGCCAGCC TGGAACTCAC
  AGACATCCAG CTGACCCTGC CTTAAGTCTG GAATGTTGTG TGCCACCATG CCCAACCCTG
  M
  TGGGAAGCCA GGCCCGGCAG CATGGGAACT GGTAGCCTGT GGCTTTAAAC GTGTCTCAAA
  ACAAACAAGC ACAGACAGAC AAACAGCAGA ATGCCGTGCT GGGCATGAAG CCCAGCCCCG
  ATGAGGTTTT GTAACACGTG AGTCTGCTAC CACTGAGCTA TGTCCACGCT GAGTGATCGC
  TCTCACTGTG ATTTTCAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45678312	mCV22566119	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss147554697	ENSMUSSNP2073439	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32668748					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135683311 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr398602	regulatory region 398602			1396 bp downstream
Rr602218	regulatory region 602218			1293 bp distal
Rr602219	regulatory region 602219			1540 bp distal
Rr602220	regulatory region 602220			1864 bp proximal