rs32667218 SNP Detail

Summary

• ID
  rs32667218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150272325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC TGTGGTAATA AGGGGACAAA
  R
  GAAGGACAGA CACATGTACA GAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46712331	NES11002134	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G	A		A	G
ss148049655	ENSMUSSNP5783346	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321428603	CHEV_4_149561977	CHEVERUD	SCREENING_POP	f	SNP										G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32667218					SNP	G	G	G	G	G	G	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712331	NES11002134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150272325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605217	regulatory region 605217			1334 bp distal
Rr605218	regulatory region 605218			1127 bp distal
Tssr40380	transcription start site region 40380			449 bp downstream
Tssr40381	transcription start site region 40381			427 bp downstream
Tssr40382	transcription start site region 40382			418 bp downstream
Tssr40383	transcription start site region 40383			400 bp downstream
Tssr40384	transcription start site region 40384			1275 bp upstream
Tssr40385	transcription start site region 40385			1330 bp upstream
Tssr44720	transcription start site region 44720			471 bp upstream
Tssr44721	transcription start site region 44721			1283 bp downstream
Tssr44722	transcription start site region 44722			1317 bp downstream
Tssr44723	transcription start site region 44723			1367 bp downstream