rs32667215 SNP Detail

Summary

• ID
  rs32667215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150272262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGCTACA GAGGACTTCT
  AGGACAGCCA GTGGTATGTA GAGAATCACT GTCATGAGAG AGAGACAGAC AGACAGCGAA
  ACAGAGAGAG ACAGACAAAC ACAGAGAGAG ACAGAGAGAG AAAGAGACAT AGAGACAGAG
  AAACAAAGAG AGACAGAGGG AGGGAGGAAG TAATTACAAA TTCTCAAAGA TGACTGAGCT
  R
  ACAAACTGCC ATGTCCTACA TTGCTTGATC CTGGACCCTG ACTGTGGTAA TAAGGGGACA
  AAAGAAGGAC AGACACATGT ACAGAAAGAC AGGGGTCAGG TAAGTTCCAC TCACTAATGG
  AGTGCACCAA CTATGCACAG CCCAGAATCT CCAAGTTTTT CTTACGTCCA GCATAGAAGG
  AGGAGCTAGC TAGTCCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46712328	NES11002133	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32667215					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712328	NES11002133	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150272262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605217	regulatory region 605217			1271 bp distal
Rr605218	regulatory region 605218			1064 bp distal
Tssr40380	transcription start site region 40380			386 bp downstream
Tssr40381	transcription start site region 40381			364 bp downstream
Tssr40382	transcription start site region 40382			355 bp downstream
Tssr40383	transcription start site region 40383			337 bp downstream
Tssr40384	transcription start site region 40384			1338 bp upstream
Tssr40385	transcription start site region 40385			1393 bp upstream
Tssr44720	transcription start site region 44720			408 bp upstream
Tssr44721	transcription start site region 44721			1346 bp downstream
Tssr44722	transcription start site region 44722			1380 bp downstream
Tssr44723	transcription start site region 44723			1430 bp downstream