rs32666412 SNP Detail

Summary

• ID
  rs32666412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150272021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACG GACACAGAGC CACGTGACTC
  Y
  GATCCCATCA GATAGGCGGG GCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46712325	NES11002164	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	T	C		C	T		T
ss148049631	ENSMUSSNP5851539	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss321428597	CHEV_4_149561673	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs32666412					SNP	T	T	T	T	T	C	T	T	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712325	NES11002164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150272021 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605217	regulatory region 605217			1030 bp distal
Rr605218	regulatory region 605218			823 bp distal
Tssr40380	transcription start site region 40380			145 bp downstream
Tssr40381	transcription start site region 40381			123 bp downstream
Tssr40382	transcription start site region 40382			114 bp downstream
Tssr40383	transcription start site region 40383			96 bp downstream
Tssr40384	transcription start site region 40384			1579 bp upstream
Tssr40385	transcription start site region 40385			1634 bp upstream
Tssr44720	transcription start site region 44720			167 bp upstream
Tssr44721	transcription start site region 44721			1587 bp downstream
Tssr44722	transcription start site region 44722			1621 bp downstream
Tssr44723	transcription start site region 44723			1671 bp downstream