rs32666409 SNP Detail

Summary

• ID
  rs32666409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150271915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCTCTT CTGGCTAACG
  TAGCTCCACT TCTTCTCTCG GAGGAGAACT CCCTCTGGGT TAATCAGAGA CTCGCTGAAG
  GCAGCAAGGA GACCCACATT CCAGGATTCC TTAGACAAGG GGCAGGGTGA GCCCTGGGGC
  CAGTGTGTCA TTTCCGGCTC CAAAAGTGCC GGTTCTTCTT TGTTTTCTTC TGTTTCTTAG
  R
  TTGTAGAATC TCCTTCTGCA TGTTTTTTAG GTAAAGGTGG TACGAAGAGT CTAGAAAACA
  TTGAAGAAAA AGAAGAATTA AGACGGACAC AGAGCCACGT GACTCCGATC CCATCAGATA
  GGCGGGGCTC CGAATTTAAG ACTAGCTTGA GCTACAGAGG ACTTCTAGGA CAGCCAGTGG
  TATGTAGAGA ATCACTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46712322	NES11002163	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32666409					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712322	NES11002163	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150271915 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr605217	regulatory region 605217			924 bp distal
Rr605218	regulatory region 605218			717 bp distal
Tssr40380	transcription start site region 40380			39 bp downstream
Tssr40381	transcription start site region 40381			17 bp downstream
Tssr40382	transcription start site region 40382			8 bp downstream
Tssr40383	transcription start site region 40383			within coordinates
Tssr40384	transcription start site region 40384			1685 bp upstream
Tssr40385	transcription start site region 40385			1740 bp upstream
Tssr44720	transcription start site region 44720			61 bp upstream
Tssr44721	transcription start site region 44721			1693 bp downstream
Tssr44722	transcription start site region 44722			1727 bp downstream
Tssr44723	transcription start site region 44723			1777 bp downstream