rs32666406 SNP Detail

Summary

• ID
  rs32666406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150271471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCTTC CAGGAGTCCC
  GAGTCCTGAG TTCAAGTCCC AGCAACCACA TGGTGGTTCA CCACCATCTG TAATGGGGAT
  CCGATGCCCT CTCCTGGTGT GTTTGAAAAC AGCGACAGTG TACTCATATA CATAAAATAA
  ATAAAATAAT AAATCTTTTT TTAAAAAAAA TAAAGTGGTG CAAAAGAATA GTAACACAAA
  R
  TTTAAAAATG AAAATTTCCA AAATCACTTT ATTACATCTA AATGCTAAAG GCTGATTTAT
  AACGTAGATC AAGGTGAATG GTTTTCTTTT TTCGGCGCTG GGGGTCAAAC CCAAGGTTGT
  GACAAGCTCT CTACCATGAG CTGCATCTGT GGACCCCAAC TTTAGGTGAA TGATTGACAG
  GGAATTATGA AAGGCTTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46712319	NES11002162	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32666406					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712319	NES11002162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150271471 () rs orientation: forward

Symbol	Name	Function Class
Car6	carbonic anhydrase 6	1 bp downstream
Rr605217	regulatory region 605217	480 bp distal
Rr605218	regulatory region 605218	273 bp distal
Tssr40380	transcription start site region 40380	402 bp upstream
Tssr40381	transcription start site region 40381	411 bp upstream
Tssr40382	transcription start site region 40382	429 bp upstream
Tssr40383	transcription start site region 40383	443 bp upstream
Tssr44720	transcription start site region 44720	376 bp downstream